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1

Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online

Forsberg, Erica M, Huan, Tao, Rinehart, Duane, Benton, H Paul, Warth, Benedikt, Hilmers, Brian, Siuzdak, Gary

Journal:

Nature Protocols

Année:

2018

Langue:

english

Fichier:

PDF, 5.77 MB

english, 2018

2

Metabolomics: beyond biomarkers and towards mechanisms

Johnson, Caroline H., Ivanisevic, Julijana, Siuzdak, Gary

Journal:

Nature Reviews Molecular Cell Biology

Année:

2016

Langue:

english

Fichier:

PDF, 622 KB

english, 2016

3

Metabolomics activity screening for identifying metabolites that modulate phenotype

Guijas, Carlos, Montenegro-Burke, J Rafael, Warth, Benedikt, Spilker, Mary E, Siuzdak, Gary

Journal:

Nature Biotechnology

Année:

2018

Langue:

english

Fichier:

PDF, 959 KB

english, 2018

4

Innovation: Metabolomics: the apogee of the omics trilogy

Patti, Gary J., Yanes, Oscar, Siuzdak, Gary

Journal:

Nature Reviews Molecular Cell Biology

Année:

2012

Langue:

english

Fichier:

PDF, 605 KB

english, 2012

5

XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification

Want, Elizabeth J., O'Maille, Grace, Abagyan, Ruben, Siuzdak, Gary, Smith, Colin A.

Journal:

Analytical Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 439 KB

english, 2006

6

Generation of Induced Pluripotent Stem Cells Using Recombinant Proteins

Hongyan Zhou, Shili Wu, Jin Young Joo, Saiyong Zhu, Dong Wook Han, Tongxiang Lin, Sunia Trauger, Geoffery Bien, Susan Yao, Yong Zhu, Gary Siuzdak, Hans R. Schöler, Lingxun Duan, Sheng Ding

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 599 KB

english, 2009

7

A noise resistant phasemeter with synchronous detection

Journal:

International Journal of Electronics

Année:

1984

Langue:

english

Fichier:

PDF, 232 KB

english, 1984

8

Noise performance of a type of phasemeter

Journal:

International Journal of Electronics

Année:

1985

Langue:

english

Fichier:

PDF, 138 KB

english, 1985

9

Intestinal bitter taste receptor activation alters hormone secretion and imparts metabolic benefits

Kok, Bernard P., Galmozzi, Andrea, Littlejohn, Nicole K., Albert, Verena, Godio, Cristina, Kim, Woojoo, Kim, Sean M., Bland, Jeffrey S., Grayson, Neile, Fang, Mingliang, Meyerhof, Wolfgang, Siuzdak, G

Journal:

Molecular Metabolism

Année:

2018

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2018

10

Simple analysis of FM–AM conversion in single-mode optical fiber

K. Perlicki, J. Siuzdak

Journal:

Microwave and Optical Technology Letters

Année:

2000

Langue:

english

Fichier:

PDF, 107 KB

english, 2000

11

Maintaining retinal astrocytes normalizes revascularization and prevents vascular pathology associated with oxygen-induced retinopathy

Michael I. Dorrell, Edith Aguilar, Ruth Jacobson, Sunia A. Trauger, Jeffrey Friedlander, Gary Siuzdak, Martin Friedlander

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2010

12

A SINGLE FILTER FOR EDGE DETECTION

Journal:

Pattern Recognition

Année:

1998

Langue:

english

Fichier:

PDF, 259 KB

english, 1998

13

10.1038/20400

Buriak, Jillian M., Wei, Jing, Siuzdak, Gary

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 302 KB

english, 1999

14

Metabolic oxidation regulates embryonic stem cell differentiation

Yanes, Oscar, Clark, Julie, Wong, Diana M, Patti, Gary J, Sánchez-Ruiz, Antonio, Benton, H Paul, Trauger, Sunia A, Desponts, Caroline, Ding, Sheng, Siuzdak, Gary

Journal:

Nature Chemical Biology

Année:

2010

Langue:

english

Fichier:

PDF, 546 KB

english, 2010

15

Solvent-Dependent Metabolite Distribution, Clustering, and Protein Extraction for Serum Profiling with Mass Spectrometry

Want, Elizabeth J., O'Maille, Grace, Smith, Colin A., Brandon, Theodore R., Uritboonthai, Wilasinee, Qin, Chuan, Trauger, Sunia A., Siuzdak, Gary

Journal:

Analytical Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 714 KB

english, 2006

16

Instability of the Multimode Fiber Frequency Response Beyond the Baseband for Coherent Sources

Siuzdak, J., Stepniak, G., Kowalczyk, M., Maksymiuk, L.

Journal:

IEEE Photonics Technology Letters

Année:

2009

Langue:

english

Fichier:

PDF, 248 KB

english, 2009

17

An accelerated workflow for untargeted metabolomics using the METLIN database

Tautenhahn, Ralf, Cho, Kevin, Uritboonthai, Winnie, Zhu, Zhengjiang, Patti, Gary J, Siuzdak, Gary

Journal:

Nature Biotechnology

Année:

2012

Langue:

english

Fichier:

PDF, 281 KB

english, 2012

18

Toward ‘Omic Scale Metabolite Profiling: A Dual Separation–Mass Spectrometry Approach for Coverage of Lipid and Central Carbon Metabolism

Ivanisevic, Julijana, Zhu, Zheng-Jiang, Plate, Lars, Tautenhahn, Ralf, Chen, Stephen, O’Brien, Peter J., Johnson, Caroline H., Marletta, Michael A., Patti, Gary J., Siuzdak, Gary

Journal:

Analytical Chemistry

Année:

2013

Langue:

english

Fichier:

PDF, 4.85 MB

english, 2013

19

Metabolomic data streaming for biology-dependent data acquisition

Rinehart, Duane, Johnson, Caroline H, Nguyen, Thomas, Ivanisevic, Julijana, Benton, H Paul, Lloyd, Jessica, Arkin, Adam P, Deutschbauer, Adam M, Patti, Gary J, Siuzdak, Gary

Journal:

Nature Biotechnology

Année:

2014

Langue:

english

Fichier:

PDF, 445 KB

english, 2014

20

Compensation of a VLC Phosphorescent White LED Nonlinearity by Means of Volterra DFE

Stepniak, Grzegorz, Siuzdak, Jerzy, Zwierko, Piotr

Journal:

IEEE Photonics Technology Letters

Année:

2013

Langue:

english

Fichier:

PDF, 685 KB

english, 2013

21

Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites

Wikoff, W. R., Anfora, A. T., Liu, J., Schultz, P. G., Lesley, S. A., Peters, E. C., Siuzdak, G.

Journal:

Proceedings of the National Academy of Sciences

Année:

2009

Langue:

english

Fichier:

PDF, 707 KB

english, 2009

22

Noise-resistant digital phase meter design

Journal:

IEEE Transactions on Instrumentation and Measurement

Année:

1987

Langue:

english

Fichier:

PDF, 485 KB

english, 1987

23

Optical and electrical properties of ultrathin transparent nanocrystalline boron-doped diamond electrodes

Sobaszek, M., Skowroński, Ł., Bogdanowicz, R., Siuzdak, K., Cirocka, A., Zięba, P., Gnyba, M., Naparty, M., Gołuński, Ł., Płotka, P.

Journal:

Optical Materials

Année:

2015

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2015

24

Novel nitrogen precursors for electrochemically driven doping of titania nanotubes exhibiting enhanced photoactivity

Siuzdak, Katarzyna, Szkoda, Mariusz, Sawczak, Mirosław, Lisowska-Oleksiak, Anna

Journal:

New Journal of Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 3.75 MB

english, 2015

25

Novel Multiprotein Complexes Identified in the Hyperthermophilic Archaeon Pyrococcus furiosus by Non-denaturing Fractionation of the Native Proteome

Menon, A. L., Poole, F. L., Cvetkovic, A., Trauger, S. A., Kalisiak, E., Scott, J. W., Shanmukh, S., Praissman, J., Jenney, F. E., Wikoff, W. R., Apon, J. V., Siuzdak, G., Adams, M. W. W.

Journal:

Molecular & Cellular Proteomics

Année:

2009

Langue:

english

Fichier:

PDF, 507 KB

english, 2009

26

Experimental Comparison of PAM, CAP, and DMT Modulations in Phosphorescent White LED Transmission Link

Stepniak, G., Maksymiuk, L., Siuzdak, J.

Journal:

IEEE Photonics Journal

Année:

2015

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2015

27

Electronic and ionic relaxations in strontium–borate glass and glass-ceramics containing bismuth and vanadium oxides

Szreder, N.A., Kupracz, P., Prześniak-Welenc, M., Karczewski, J., Gazda, M., Siuzdak, K., Barczyński, R.J.

Journal:

Solid State Ionics

Année:

2015

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2015

28

Substantial OBI Noise Reduction in MM Fiber Network

Siuzdak, Jerzy, Kowalczyk, Marcin, Maksymiuk, Lukasz, Stepniak, Grzegorz

Journal:

IEEE Photonics Technology Letters

Année:

2013

Langue:

english

Fichier:

PDF, 548 KB

english, 2013

29

Digital phasemeter with phase compensation

Journal:

Electronics Letters

Année:

1985

Langue:

english

Fichier:

PDF, 269 KB

english, 1985

30

Corrigendum to “Ordered titanium templates functionalized by gold films for biosensing applications – Towards non-enzymatic glucose detection” [Talanta 166 (2017) 207–214]

Grochowska, Katarzyna, Szkoda, Mariusz, Karczewski, Jakub, Śliwiński, Gerard, Siuzdak, Katarzyna

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 104 KB

english, 2017

31

Nano-engineered diamond-based materials for supercapacitor electrodes: A review

Siuzdak, Katarzyna, Bogdanowicz, Robert

Journal:

Energy Technology

Année:

2017

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2017

32

Ordered titania nanotubes layer selectively annealed by laser beam for high contrast electrochromic switching

Siuzdak, Katarzyna, Szkoda, Mariusz, Sawczak, Mirosław, Karczewski, Jakub, Ryl, Jacek, Cenian, Adam

Journal:

Thin Solid Films

Année:

2018

Langue:

english

Fichier:

PDF, 8.50 MB

english, 2018

33

Modified Manganese Phosphate Conversion Coating on Low-Carbon Steel

Duszczyk, Jakub, Siuzdak, Katarzyna, Klimczuk, Tomasz, Strychalska-Nowak, Judyta, Zaleska-Medynska, Adriana

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 14.62 MB

english, 2020

34

Antioxidant or neurotrophic factor treatment preserves function in a mouse model of neovascularization-associated oxidative stress

Dorrell, Michael I., Aguilar, Edith, Jacobson, Ruth, Yanes, Oscar, Gariano, Ray, Heckenlively, John, Banin, Eyal, Ramirez, G. Anthony, Gasmi, Mehdi, Bird, Alan, Siuzdak, Gary, Friedlander, Martin

Journal:

Journal of Clinical Investigation

Année:

2009

Langue:

english

Fichier:

PDF, 7.08 MB

english, 2009

35

Probing viruses with mass spectrometry

Journal:

Journal of Mass Spectrometry

Année:

1998

Langue:

english

Fichier:

PDF, 544 KB

english, 1998

36

Preparative mass spectrometry with electrospray ionization

Siuzdak, Gary, Hollenbeck, Thomas, Bothner, Brian

Journal:

Journal of Mass Spectrometry

Année:

1999

Langue:

english

Fichier:

PDF, 42 KB

english, 1999

37

Applications of mass spectrometry in combinatorial chemistry

Gary Siuzdak, J. Kathleen Lewis

Journal:

Biotechnology and Bioengineering

Année:

1998

Langue:

english

Fichier:

PDF, 187 KB

english, 1998

38

Surlyn®/[silicon oxide] hybrid materials. 2. Physical properties characterization

David A. Siuzdak, Kenneth A. Mauritz

Journal:

Journal of Polymer Science Part B: Polymer Physics

Année:

1999

Langue:

english

Fichier:

PDF, 208 KB

english, 1999

39

Structural Examination of Supramolecular Architectures by Electrospray Ionization Mass Spectrometry

Christoph A. Schalley, José M. Rivera, Tomás Martín, Javier Santamaría, Gary Siuzdak, Julius Rebek Jr.

Journal:

European Journal of Organic Chemistry

Année:

1999

Langue:

english

Fichier:

PDF, 316 KB

english, 1999

40

Bestimmung von Enantiomerenüberschüssen durch kinetische Racematspaltung und Massenspektrometrie

Jianhua Guo, Jiangyue Wu, Gary Siuzdak, M. G. Finn

Journal:

Angewandte Chemie

Année:

1999

Langue:

german

Fichier:

PDF, 106 KB

german, 1999

41

Measurement of Enantiomeric Excess by Kinetic Resolution and Mass Spectrometry

Jianhua Guo, Jiangyue Wu, Gary Siuzdak, M. G. Finn

Journal:

Angewandte Chemie International Edition

Année:

1999

Langue:

english

Fichier:

PDF, 105 KB

english, 1999

42

Surlyn®/silicate hybrid materials. I. Polymer in situ sol–gel process and structure characterization

David A. Siuzdak, Paul R. Start, Kenneth A. Mauritz

Journal:

Journal of Applied Polymer Science

Année:

2000

Langue:

english

Fichier:

PDF, 261 KB

english, 2000

43

Mass Spectrometry of an Intact Virus

Stephen D. Fuerstenau, W. Henry Benner, John J. Thomas, Christophe Brugidou, Brian Bothner, Gary Siuzdak

Journal:

Angewandte Chemie

Année:

2001

Langue:

english

Fichier:

PDF, 180 KB

english, 2001

44

Mass Spectrometry of an Intact Virus

Stephen D. Fuerstenau, W. Henry Benner, John J. Thomas, Christophe Brugidou, Brian Bothner, Gary Siuzdak

Journal:

Angewandte Chemie

Année:

2001

Fichier:

PDF, 111 KB

2001

45

Mass Spectrometry of an Intact Virus

Stephen D. Fuerstenau, W. Henry Benner, John J. Thomas, Christophe Brugidou, Brian Bothner, Gary Siuzdak

Journal:

Angewandte Chemie International Edition

Année:

2001

Langue:

english

Fichier:

PDF, 176 KB

english, 2001

46

Mass Spectrometry of an Intact Virus

Stephen D. Fuerstenau, W. Henry Benner, John J. Thomas, Christophe Brugidou, Brian Bothner, Gary Siuzdak

Journal:

Angewandte Chemie International Edition

Année:

2001

Langue:

english

Fichier:

PDF, 43 KB

english, 2001

47

Micellen in der Gasphase

Dr. Gary Siuzdak, Brian Bothner

Journal:

Angewandte Chemie

Année:

1995

Fichier:

PDF, 520 KB

1995

48

Asymmetrische Dihydroxylierung zum schnellen Aufbau von chiralen Dendrimeren aus 1,2-Diolen

Han-Ting Chang, Dr. Chien-Tien Chen, Dr. Teruyuki Kondo, Dr. Gary Siuzdak, Prof. K. Barry Sharpless

Journal:

Angewandte Chemie

Année:

1996

Langue:

german

Fichier:

PDF, 612 KB

german, 1996

49

Cleavable Linkers for Porous Silicon-Based Mass Spectrometry

Jun-Cai Meng, Claudia Averbuj, Warren G. Lewis, Gary Siuzdak, M. G. Finn

Journal:

Angewandte Chemie

Année:

2004

Langue:

english

Fichier:

PDF, 211 KB

english, 2004

50

Reactivity-Based One-Pot Synthesis of the Tumor-Associated Antigen N3 Minor Octasaccharide for the Development of a Photocleavable DIOS-MS Sugar Array

Jinq-Chyi Lee, Chung-Yi Wu, Junefredo V. Apon, Gary Siuzdak, Chi-Huey Wong

Journal:

Angewandte Chemie

Année:

2006

Langue:

english

Fichier:

PDF, 172 KB

english, 2006